Preheat oven to 375°F (190°C). Lightly grease a small baking dish, skillet, or ramekins with olive oil or cooking spray.
In a mixing bowl, combine cottage cheese, shredded cheese, salt, and black pepper. Stir until smooth and well combined. Add any cooked vegetables, herbs, or flavor mix-ins.
Spread the cottage cheese mixture evenly into the prepared baking dish. Use the back of a spoon to create 4 shallow wells.
Crack one egg into each well. Season lightly with salt and pepper and add optional toppings if desired.
Bake for 18 to 22 minutes, depending on your preferred egg texture. The eggs should be set and the edges lightly golden.
Remove from the oven and let rest for 2 minutes. Garnish with fresh herbs, extra cheese, pesto, or hot sauce before serving.